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Copyright © 1999 The American Society of Human Genetics. All rights reserved.
The American Journal of Human Genetics, Volume 64, Issue 3, 897-900, 1 March 1999

doi:10.1086/302298

Protein-Truncation Mutations in the RP2 Gene in a North American Cohort of Families with X-Linked Retinitis Pigmentosa

Alan J. Mears1Linn Gieser1Denise Yan1Cynthia Chen1Stacey Fahrner1Suja Hiriyanna1Ricardo Fujita1Samuel G. Jacobson3Paul A. Sieving1 and Anand Swaroop12Go To Corresponding Author 

1 Department of Ophthalmology, University of Michigan, Ann Arbor
2 Department of Human Genetics, Kellogg Eye Center, University of Michigan, Ann Arbor
3 Department of Ophthalmology, Scheie Eye Institute, University of Pennsylvania, Philadelphia

Address for correspondence and reprints: Dr. Anand Swaroop, Kellogg Eye Center, University of Michigan, 1000 Wall Street, Ann Arbor, MI 48105

Drs. Mears and Yan, Ms. Gieser, and Ms. Chen contributed equally to this work.

Present affiliation: Facultad de Medicina Humana, Universidad San Martin de Porres, Lima, Peru.


To the Editor:

X-linked forms of retinitis pigmentosa (XLRP) are a genetically heterogeneous group of retinal dystrophies that result in relatively severe clinical manifestations (Bird Bird, 1975; for a review, see Aldred et al. Aldred et al., 1994). The two major XLRP loci, RP2 (MIM 312600) and RP3 (MIM 312610), have been mapped to Xp11.32-11.23 and Xp21.1, respectively (for a review see Aldred et al. Aldred et al., 1994; Fujita et al. Fujita et al., 1996; Fujita and Swaroop Fujita and Swaroop, 1996; Thiselton et al. Thiselton et al., 1996). The RP15 locus (MIM 300029) has been mapped to Xp22.13-22.11 in a single family with retinal degeneration (McGuire et al. McGuire et al., 1995), and some evidence exists for a fourth locus, RP6 (MIM 312612), at Xp21.3 (Musarella et al. Musarella et al., 1990; Ott et al. Ott et al., 1990). We recently localized another genetic locus, RP24 (MIM 300155), at Xq26-27 by using linkage analysis in an XLRP family (Gieser et al. Gieser et al., 1998). In addition, the disease in some retinitis pigmentosa (RP) families with apparently X-linked inheritance does not seem to be linked to markers in the region of mapped XLRP loci (Teague et al. Teague et al., 1994; L. Gieser, R. Fujita, and A. Swaroop, unpublished data). It therefore appears that mutations in several genes on the X chromosome may lead to RP.

The first XLRP gene, RPGR (retinitis pigmentosa GTPase regulator), was isolated from the RP3 region (Meindl et al. Meindl et al., 1996; Roepman et al. Roepman et al., 1996). Genetic analysis has suggested that RP3 accounts for 70% of XLRP (Ott et al. Ott et al., 1990; Teague et al. Teague et al., 1994; Fujita et al. Fujita et al., 1997). However, RPGR mutations are detected in only 20% of XLRP (and genetically defined RP3) families (Buraczynska et al. Buraczynska et al., 1997; Fujita et al. Fujita et al., 1997; M. Guevara-Fujita, S. Fahrner, and A. Swaroop, unpublished data). The RP2 gene has recently been isolated by a positional cloning strategy (Schwahn et al. Schwahn et al., 1998) and is predicted to encode a protein of 350 amino acids with homology to cofactor C, which is involved in folding of β-tubulin (Tian et al. Tian et al., 1996). The RP2 locus is believed to represent 20%–30% of XLRP in Europe (Ott et al. Ott et al., 1990; Teague et al. Teague et al., 1994), but little or no genetic evidence exists for an RP2 subtype in the XLRP families from North America (Musarella et al. Musarella et al., 1990; Ott et al. Ott et al., 1990). Because our haplotype analysis provided suggestive evidence for RP2 in two North American families (R. Fujita, L. Gieser, S. G. Jacobson, P. A. Sieving, and A. Swaroop, unpublished data), we examined the genomic DNA from our cohort of XLRP patients for causative mutations in the RP2 gene.

The procedures for clinical ascertainment of patients, obtaining blood samples, and preparation of genomic DNA have been reported elsewhere (Fujita et al. Fujita et al., 1997). The families included in the present study showed an apparent X-linked inheritance and no male-to-male transmission. Affected male individuals had a clinical diagnosis of RP. Initially, one affected male each from 51 XLRP families was included in the RP2 screening project. This cohort did not include families with a causative RPGR mutation or those in which the disease was genetically mapped to the RP3 locus (see Buraczynska et al. Buraczynska et al., 1997 and Fujita et al. Fujita et al., 1997). Oligonucleotide primers flanking each of the five RP2 exons (Schwahn et al. Schwahn et al., 1998) were used to amplify products from genomic DNA. PCR products were sequenced with various primers (Schwahn et al. Schwahn et al., 1998), either directly or after gel purification, by means of the 33P-Thermosequenase cycle-sequencing kit (Amersham Life Science). The composite nucleotide sequence of the RP2 exons and at the exon-intron boundaries is shown in figure 1. The derived sequence of RP2 polypeptide was identical to that reported elsewhere (Schwahn et al. Schwahn et al., 1998).

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Figure 1
Composite nucleotide sequence showing RP2 exons, including the coding region, and the exon-intron boundaries. The numbers on the right refer to the amino acid residues of the predicted RP2 protein.

The complete sequencing of RP2 exons and their corresponding exon-intron junction regions in 51 North American XLRP patients revealed sequence changes in five individuals (fig. 2 and Table 1). All of the alterations were identified in the coding region: a 2-bp insertion in exon 1, a 13-bp deletion in exon 2, a nonsense mutation in exon 2, a 7-bp insertion in exon 2, and a 2-bp insertion in exon 4. Except for the C→T change at nucleotide 358 (arginine codon 120 in exon 2), resulting in a nonsense codon, the remaining four changes are deletions or insertions that would cause a frameshift. Therefore, all changes are predicted to result in a truncated RP2 protein. One of the patients (A1137) has an additional sequence alteration (T→G at nucleotide 322, leading to a Cys108Gly change); however, because this individual also has a 13-bp deletion nearby, we did not determine whether the T→G alteration may represent a disease-causing substitution. Each sequence change segregated in complete concordance with the disease in the respective family members that were available for the study (Table 1). We suggest, on the basis of the nature of mutations and their cosegregation in respective families, that these sequence changes are causative RP2 mutations.

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Figure 2
Representative sequencing gels showing two of the RP2 mutations identified in this report. Sequences in the region of causative mutations are shown. The boxed sequence indicates the 2-bp insertion in patient A514. The location of the 13-bp deletion in patient A1137 is indicated by the horizontal bar. This patient also has a nucleotide substitution, indicated by an asterisk (*).
 
Table 1 RP2 Mutations in Patients with X-Linked Retinitis Pigmentosa
Patient NumberExonNucleotide Sequence ChangeEffect of MutationMeioses Examined
A2240177/78insCAFrameshift, 305 amino acids missing8
A11372T→G at 322 and del 330-342Cys108Gly and a frameshift, 200 amino acids missing1
A11352C→T at 358Arg120Stop, 230 amino acids missing4
A5122483/484insGGGCTAAFrameshift, 176 amino acids missing2
A5144925/926insAGFrameshift, 35 amino acids missing3
Note.—Nucleotide positions are indicated according to the RP2 coding sequence (National Center for Biotechnology Information accession number AJ007590; Schwahn et al. Schwahn et al., 1998).

This is the first report demonstrating the presence of the RP2 subtype in North American families with XLRP. In addition to reporting five novel RP2 mutations, our study addresses several significant issues:

1. The RP2 mutations that we identified in our North American cohort of XLRP families are different from the seven reported in European families (Schwahn et al. Schwahn et al., 1998), suggesting a high rate of new mutations and a lack of founder effect. Similar observations have been made for RPGR mutations in XLRP-RP3 families (Buraczynska et al. Buraczynska et al., 1997).
2. All five mutations reported here are predicted to result in a truncated RP2 protein. Except for Arg118His, the other six mutations identified by Schwahn et al. (Schwahn et al., 1998) would also result in a shorter, or no, RP2 protein. We therefore suggest that the clinical phenotype in most if not all affected XLRP-RP2 families is due to the loss of RP2 function.
3. Our results suggest that it should be possible to identify a majority of RP2 mutations in XLRP families by a protein-truncation test. Because RP2 protein is widely expressed, a relatively inexpensive diagnostic assay based on immunoblot analysis with RP2-specific antibody (when available) can also be developed. It should be noted that a protein-based diagnostic test has been established for choroideremia, another X-linked retinal dystrophy (MacDonald et al. MacDonald et al., 1998). Such a test, however, would be hard to develop for RPGR because of the diverse nature of mutations spanning a larger region of protein (Buraczynska et al. Buraczynska et al., 1997) and multiple mRNA and protein isoforms (Yan et al. Yan et al., 1998).
4. Most of the mutations (Schwahn et al. Schwahn et al., 1998; present article) are detected in exon 2, which can be amplified as a 799-bp product. Additional mutations are present in two small exons—1 and 4. Of interest, no mutation has so far been detected in exon 3 or 5. This clustering of mutations might have significant implications for functional analysis of the RP2 protein and for prenatal and presymptomatic diagnosis.
5. Thus far it appears that screening of both RPGR and RP2 genes leads to identification of disease-causing mutations in fewer than half of XLRP families. The five reported RP2 mutations were identified by direct sequencing of coding region and exon-intron boundaries. Analysis of the RP2 promoter region and/or the RP2 genomic DNA by Southern blotting might reveal additional causative mutations.

Although much of the genetic and phenotypic complexities of XLRP have yet to be resolved, the cloning of RPGR and RP2 genes represents a milestone in RP research. Identification of mutations in these two genes in many XLRP families provides renewed hope for more-precise diagnosis and better genetic counseling for this devastating disease.

Acknowledgments

We thank Drs. Sten Andreasson, David Birch, Nancy Carson, Bernie Chodirker, Mark Evans, Gerald Fishman, John Heckenlively, Dennis Hoffman, Maria Musarella, and Beth Spriggs and Mr. Eric L. Krivchenia for some of the patient samples that were included in the mutation screening. We acknowledge the assistance of Dr. Wolfgang Berger for providing the RP2 primer sequences. We thank Dr. Monika Buraczynska for organization of the patient registry; Dr. Radha Ayyagari for discussions; Dr. Beverly Yashar for counseling; Ms. Cara Coats for assistance in patient collection; Mr. Jason Cook, Ms. Patricia Forsythe, and Ms. Eve Bingham for technical assistance; and Ms. D. Giebel for secretarial assistance. This research was supported by National Institutes of Health (NIH) grants EY05627, EY06094, and EY07961 and by grants from the Foundation Fighting Blindness, the Chatlos Foundation, the Kirby Foundation, the Mackall Trust, and Research to Prevent Blindness. We also acknowledge NIH grants EY07003 (core) and M01-RR00042 (General Clinical Research Center) and a shared equipment grant from the Office of Vice President for Research (University of Michigan). A.S. is recipient of a Lew R. Wasserman Merit Award, and P.A.S., a Senior Scientific Investigator Award, both from Research to Prevent Blindness.


Electronic-Database Information

Accession numbers and URLs for data in this article are as follows:

Online Mendelian Inheritance in Man (OMIM), http://www.ncbi.nlm.nih.gov/Omim (for RP2 [MIM 312600], RP3 [MIM 312610], RP6 [MIM 312612], RP15 [MIM 300029], and RP24 [MIM 300155])

National Center for Biotechnology Information, http://www.ncbi.nlm.nih.gov/(for RP2 sequence, accession number AJ007590)

References



Aldred et al., 1994 Aldred, MA, Jay, M, and Wright, AF (1994). X-linked retinitis pigmentosa. In Molecular genetics of inherited eye disorders. Wright, AF, Jay, B, eds. (Chur, Switzerland: Harwood Academic Publishers), pp. 259–276. PubMed

Bird, 1975 Bird, AC (1975). X-linked retinitis pigmentosa. Br J Ophthalmol 59, 177–199. CrossRef | PubMed

Buraczynska et al., 1997 Buraczynska, M, Wu, W, Fujita, R, Buraczynska, K, Phelps, E, Andreasson, S, and Bennett, J, et al. (1997). Spectrum of mutations in the RPGR gene that are identified in 20% of families with X-linked retinitis pigmentosa. Am J Hum Genet 61, 1287–1292. Abstract | Full Text | (656 kb) | CrossRef | PubMed

Fujita et al., 1996 Fujita, R, Bingham, E, Forsythe, P, Segal, M, Aita, V, Navia, BA, and Dry, K, et al. (1996). A recombination outside the BB deletion refines the location of the X-linked retinitis pigmentosa locus RP3. Am J Hum Genet 59, 152–158. PubMed

Fujita et al., 1997 Fujita, R, Buraczynska, M, Gieser, L, Wu, W, Forsythe, P, Abrahamson, M, and Jacobson, SG, et al. (1997). Analysis of the RPGR gene in 11 pedigrees with the retinitis pigmentosa type 3 genotype: paucity of mutations in the coding region but splice defects in two families. Am J Hum Genet 61, 571–580. Abstract | | (525 kb) | CrossRef | PubMed

Fujita and Swaroop, 1996 Fujita, R, and Swaroop, A (1996). RPGR: part one of the X-linked retinitis pigmentosa story. Mol Vis 2, 4. PubMed

Gieser et al., 1998 Gieser, L, Fujita, R, Goring, HHH, Ott, J, Hoffman, DR, Cideciyan, AV, and Birch, DG, et al. (1998). A novel locus (RP24) for X-linked retinitis pigmentosa maps to Xq26-27. Am J Hum Genet 63, 1439–1447. Abstract | Full Text | (1895 kb) | CrossRef | PubMed

MacDonald et al., 1998 MacDonald, IM, Mah, DY, Ho, YK, Lewis, RA, and Seabra, MC (1998). A practical diagnostic test for choroideremia. Ophthalmology 105, 1637–1640. CrossRef | PubMed

McGuire et al., 1995 McGuire, RE, Sullivan, LS, Blanton, SH, Church, MW, Heckenlively, JR, and Daiger, SP (1995). X-linked dominant cone-rod degeneration: linkage mapping of a new locus for retinitis pigmentosa (RP15) to Xp22.13-p22.11. Am J Hum Genet 57, 87–94. PubMed

Meindl et al., 1996 Meindl, A, Dry, K, Herrmann, K, Manson, F, Ciccodicola, A, Edgar, A, and Carvalho, MRS, et al. (1996). A gene (RPGR) with homology to the RCC1 guanine nucleotide exchange factor is mutated in X-linked retinitis pigmentosa (RP3). Nat Genet 13, 35–42. CrossRef | PubMed

Musarella et al., 1990 Musarella, MA, Anson-Cartwright, L, Leal, SM, Gilbert, LD, Worton, RG, Fishman, GA, and Ott, J (1990). Multipoint linkage analysis and heterogeneity testing in 20 X-linked retinitis pigmentosa families. Genomics 8, 286–296. CrossRef | PubMed

Ott et al., 1990 Ott, J, Bhattacharya, SS, Chen, JD, Denton, MJ, Donald, J, Dubay, C, and Farrar, GJ, et al. (1990). Localizing multiple X-chromosome-linked retinitis pigmentosa loci using multilocus homogeneity tests. Proc Natl Acad Sci USA 87, 701–704. CrossRef | PubMed

Roepman et al., 1996 Roepman, R, van Duijnhoven, G, Rosenberg, T, Pinckers, AJLG, Bleeker-Wagemakers, LM, Bergen, AAB, and Post, J, et al. (1996). Positional cloning of the gene for X-linked retinitis pigmentosa 3: homology with the guanine-nucleotide-exchange factor RCC1. Hum Mol Genet 5, 1035–1041. CrossRef | PubMed

Schwahn et al., 1998 Schwahn, U, Lenzner, S, Dong, J, Feil, S, Hinzmann, B, van Duijnhoven, G, and Kirschner, R, et al. (1998). Positional cloning of the gene for X-linked retinitis pigmentosa 2. Nat Genet 19, 327–332. CrossRef | PubMed

Teague et al., 1994 Teague, PW, Aldred, MA, Jay, M, Dempster, M, Harrison, C, Carothers, AD, and Hardwick, LJ, et al. (1994). Heterogeneity analysis in 40 X-linked retinitis pigmentosa families. Am J Hum Genet 55, 105–111. PubMed

Thiselton et al., 1996 Thiselton, DL, Hampson, RM, Nayudu, M, Maldergem, LV, Wolf, ML, Saha, BK, and Bhattacharya, SS, et al. (1996). Mapping the RP2 locus for X-linked retinitis pigmentosa on proximal Xp: a genetically defined 5-cM critical region and exclusion of candidate genes by physical mapping. Genome Res 6, 1093–1102. CrossRef | PubMed

Tian et al., 1996 Tian, G, Huang, Y, Rommelaere, H, Vandekerckhove, J, Ampe, C, and Cowan, NJ (1996). Pathways leading to correctly folded β-tubulin. Cell 86, 287–296. CrossRef | PubMed

Yan et al., 1998 Yan, D, Swain, PK, Breuer, D, Tucker, RM, Wu, W, Fujita, R, and Rehemtulla, A, et al. (1998). Biochemical characterization and subcellular localization of the mouse retinitis pigmentosa GTPase regulator (mRpgr). J Biol Chem 273, 19656–19663. CrossRef | PubMed


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